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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015860896.1_cds_XP_016514760.1_27178
CDS Infomation

[gene=LOC107831509] [db_xref=GeneID:107831509] [protein=threonine--tRNA ligase, mitochondrial 1-like] [protein_id=XP_016514760.1] [location=join(7847..8121,8978..9215,9348..9407,9998..10087,10784..10858,10963..11091,11176..11265,12040..12128,12206..12302,13219..13305,14235..14319,14803..14897,15092..15124,15204..15290,15591..15836)] [gbkey=CDS]
Sequence

ATGCTACTGGCTTCCCCACTCTATTGGCGCCTCTTCACCCAATCTATCTGCCGCCGTCCT
CCGCCGTGTAAACAGTTTCTCCTCCTCCGCCGTTTCTCATCAGAACCACCAATGGGAAAA
GCTGCGAAAGGTTCCGAAGCTAATTCCAGCGCCGTCTCCTACCCTAAAGACGAAAGTTAT
CTACAAAACGTTATTCCTAAACGTATCGCTCTCTTCCAGTCTATTCAGAATGAGCAACAC
CTTCAGCGCCTTTCCCTCTCCCCTGATCCTATCAAGATCGAGTTACCAAGTGGGACAATG
AAGGAGGGGAAGAAATGGAATACCACACCATTGGATATAGCAAAGGAGATATCAAAGAGC
TTGGCTTCAAACGCATTGATCGCGAAGGTGAACGGGGTGCTTTGGGATTTGTTGAGGCCA
TTGGAAGGTGATTGTAAGCTAGAGCTCTTCACTTTTGACAGTGACGAAGGCCGCGACACA
TTTTGGCACTCGAGTGCTCACATTCTTGGCGAGTCGTTGGAGAGGACATATGGATGCAAA
TTGTGTATTGGACCGTGTACAACAAGAGGAGAGGGTTTCTATTATGACGCCTTTTATGGT
GAACTGGGATTAAATGAGGATCATTTTAAACGGATCGAGTCGGAGGCAGCAAAAGCTGTT
TCGGAGAAACAACCTTTTGAACGCATTGAAGTTTCACGGCAACAAGCTCTTGATATGTTC
TCTGATAATAGGTTTAAGGTGGAAATCATTAAGGATTTGCCTGAAGATAAGACAATCACA
GTATACAGATGTGGTCCCTTAGTTGACCTATGCCGTGGTCCGCATATACCAAATACTTCT
TTTGTTAAAGCATTAGCTTGTACAAAGGCTTCATCAGCATATTGGAGAGGAGATAAGGAC
CGTGAAAGCTTGCAAAGAGTTTATGGAATATCTTATCCAGATAAAAAACAGTTGAAGGAA
TACCTAGCTATGATCGAGGAAGCAAAGAAATATGATCACAGAGAGCTGACTAAGAAGCAA
GAGCTTTTCTTTTTTCATCCATTAAGCCCTGGAAGTTGTTTCTTTCTTCCACATGGTGCT
CGAGTTTGCAACAAATTGTTGGAGTTCATAAAGAGCCAGTATTGGAAGAGAGGCTATGAG
GAGGTTTGGAGTCCAAATATGTACAACATGCAGTTGTGGGAAACTTCTGGGCATGCTGCA
AATTACAAGGAGAACATGTTCGTTTTTGAGATTGAAAAACAAGAATTTGGGCTGAAGCCA
ATGAATTGCCCAGGCCATTGTTTAATATTTGATCACAGAGTTCGTTCCTACAGGGAGCTA
CCACTCCGTCTGGCTGACTTTGGAGTTCTACACAGGAATGAGGCCAGTGGTGCACTTACT
GGCTTAACACGTGTCAGGAGATTTCAGCAGGATGATGCTCACATCTTTTGCAGGGAGTCA
CAGATTAAAGATGAAGTCAAGGGTGTCTTAGATTTCATCAGCTATGTGTATAAGATATTT
GGTTTCACTTTCGACCTGAAGTTATCAACGAGGCCTGAGAAGTATCTTGGAGACTTAGAA
AGCTGGAACAAGGCTGAAGATTCTCTTGCGGAAGCATTGGACGAGTTCGGAAAGCCCTGG
GAGGTTTGCCATCAAATTTTCTTGGATCTGAGAATTAAAAAAATTTGGACTTTAGACATC
ATTTATTACAATTTCACACCTTTTTTGGTGCTTCTTTTGTCCCACTCTTCCATTTTGTAT
GCTACATCACTCAATGATGACACCATTCTACTATAA

Peptide Sequence

PEP ID

XP_016514760.1
PEP Infomation

PREDICTED: threonine--tRNA ligase, mitochondrial 1-like [Nicotiana tabacum]
Sequence

MLLASPLYWRLFTQSICRRPPPCKQFLLLRRFSSEPPMGKAAKGSEANSSAVSYPKDESY
LQNVIPKRIALFQSIQNEQHLQRLSLSPDPIKIELPSGTMKEGKKWNTTPLDIAKEISKS
LASNALIAKVNGVLWDLLRPLEGDCKLELFTFDSDEGRDTFWHSSAHILGESLERTYGCK
LCIGPCTTRGEGFYYDAFYGELGLNEDHFKRIESEAAKAVSEKQPFERIEVSRQQALDMF
SDNRFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKALACTKASSAYWRGDKD
RESLQRVYGISYPDKKQLKEYLAMIEEAKKYDHRELTKKQELFFFHPLSPGSCFFLPHGA
RVCNKLLEFIKSQYWKRGYEEVWSPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKP
MNCPGHCLIFDHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES
QIKDEVKGVLDFISYVYKIFGFTFDLKLSTRPEKYLGDLESWNKAEDSLAEALDEFGKPW
EVCHQIFLDLRIKKIWTLDIIYYNFTPFLVLLLSHSSILYATSLNDDTILL

Transcript Sequence

Gene sequence data has not been registered.